AT4G08380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT1G26240.1); Has 159075 Blast hits to 37229 proteins in 1526 species: Archae - 242; Bacteria - 19555; Metazoa - 60385; Fungi - 27429; Plants - 26758; Viruses - 4154; Other Eukaryotes - 20552 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:5311093..5312406 | ||||||||||||||||||||
| Molecular Weight (calculated) | 48624.20 Da | ||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANPSNWPSL LMVILALYAV AAHTSAQYPY SPPSPPPYVY SSPPPYTYSP PPSPYVYKSP PYVYSSPPPY AYSPPPSPYV YKSPPYVYSS PPPYAYSPPP 101: SPYVYKSPPY VYSSPPPYAY SPPPSPYVYK SPPYVYSSPP PYVYSSPPPY AYSPPPYAYS PPPSPYVYKS PPYVYSSPPP YAYSPPPSPY VYKSPPYVYS 201: SPPPYAYSPP PYAYSPPPSP YVYKSPPYVY SSPPPYAYSP PPSPYVYKSP PYVYSSPPPY AYSPPPSPYV YKSPPYVYSS PPPYAYSPPP SPYVYKSPPY 301: VYSSPPPYAY SPPPSPYVYK SPPYVYSSPP PYAYSPPPSP YVYKSPPYVY SSPPPYAYSP PPSPYVYKSP PYVYSSPPPY TYSPPPYAYS PPPPCPDVYK 401: PPPYVYSSPP PYVYNPPPSS PPPSPSYSYS SPPPPIY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)