AT4G04980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.660 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:2544210..2547893 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99326.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||
| Length | 880 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSGRLCGFT PITFCRKISR LQVARGLALK RLIKGKHDFR RTTTSKNNVE KKKNKEIRRT VSQISSSVAQ ASSPKSFNST KHVSTPTATA SPLSVKNSKT 101: KANTPRKNTL EGSSPKCSAN FILMVELRKN IFAFRDMIDL PSLDGSLSVT EIITQTMKDL QKLSPEIVTI NQSFEMEGAD MDKMLIFFYE DLRAIGDSWI 201: MDSDWIYRSK YKNSGVGKNK SDRLVEHVLA ALDGLIKTTR ERFGMMDLES EGRKSFTTPK GVSSEARRSF TRSASYSESN NSFYPSPLTP RSVLPGTMMM 301: SSNSTSPSLW NLRAQALDRL SPVDLKRFAM QILSQRDSES VSETKIGIEE ENEESEILAE EKEEEDNDFS VLETEGTEQE IKTEHHRESS GTEHETEAKD 401: HSEGFETEHH RIECFETEHE IDADDHIEDF ETEHHHIEGL ETEHEIDAND HIEDFETEHH HIEGFETEHE NETEDHSETT TSETDSTESS PKEDVPPPPP 501: LTSPQTPSPT VSTFNTKSSL RSQPPPPPPS PEHKAPAPPP PPPMSKASES GEFCQFSKTH STNGDNAPSM PAPPAPPGSG RSLKKATSKL RRSAQIANLY 601: WALKGKLEGR GVEGKTKKAS KGQNSVAEKS PVKVARSGMA DALAEMTKRS SYFQQIEEDV QKYAKSIEEL KSSIHSFQTK DMKELLEFHS KVESILEKLT 701: DETQVLARFE GFPEKKLEVI RTAGALYKKL DGILVELKNW KIEPPLNDLL DKIERYFNKF KGEIETVERT KDEDAKMFKR YNINIDFEVL VQVKETMVDV 801: SSNCMELALK ERREANEEAK NGEESKMKEE RAKRLWRAFQ FAFKVYTFAG GHDERADCLT RQLAHEIQTD PDQSESSIMS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)