AT3G54570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant calmodulin-binding protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 207 Blast hits to 162 proteins in 51 species: Archae - 0; Bacteria - 22; Metazoa - 7; Fungi - 9; Plants - 118; Viruses - 7; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20197949..20199202 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47209.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||
| Length | 417 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQSKTAQAL VGQGHGRRLR PEMIKKRPRA SRLPQPTTPE KQIVAKVTGG SPNYMKGTRS SEARRQSQSV QAGLDKKSQT GKKLDSCSRE KKQSSSRSLK 101: KGQSFKRSGR IGRCWDANVH RATCSSLLKN SKFTEDLMFT SPHILKVCPY TYCSLNAHLH SQFPPLLSFI SERRRSLKSH ASGECDDGCV EIYVDEKKEN 201: RSTRETDIKV IDSEAENIEM ELGEVKDLDS ESAEIVSLLE GEGIESCNFA VLEQSENSSE DQEREEGGFS NNTTNSLLFE QSIIQDDIIL GNAVDEKHES 301: KEAEDWKEAD GEKVKERIKL VLKTEEALLS LAQKPCNREE CIEDCRRLNP REPNYIQTTV EPSNETVDLR HQDMDERKKA EEWMIDYALQ HTVSKLVVER 401: KKDVALLVEA FETTVPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)