AT3G54060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 455 Blast hits to 322 proteins in 98 species: Archae - 0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20018915..20020826 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 49291.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||
| Length | 456 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKSSRSKGS NLIGKGEVTP TQVAFIVDRY LHDNRFSETR ALFRSEASSL ISDSPIRNVP NSLMTLDAML NHYVSLKKQK VSLDQEKLKL DQEKIRVQNL 101: LQGMENVMNT YNASLTAPPP ASAPTSQQKN HSISSSGLSQ YNTLNGMSVS LLGNKRVDFG NFSTPSTSQS ITGKRKGPEV SVTAPPVSRK SRITRATGTN 201: KLPQADKAAN NFTSETLAVA KNSASNELIG NGSSVVKCLF NKADSSVPTS STCFRTPQKH ASSGSDKSNS SQKEVTPTNT NCTIVTKERF TISPLKQITS 301: YSVERSHLIS FSSPVKSNLK MSNKRDHVKG KLNFDDTDTE TCLEAPATAD LVSTSPSGSE PEVDLFDMDF SNLDFSELLV DFDLGCEGSA NHCLSLTPNQ 401: PTQTVSGSSP ESGDCNLESD QPFLEYTSTV TDVIQISRCI DPLSNSSHSS LNTDKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)