AT3G08790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS/GAT family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 3588 Blast hits to 3520 proteins in 260 species: Archae - 0; Bacteria - 33; Metazoa - 1225; Fungi - 675; Plants - 366; Viruses - 928; Other Eukaryotes - 361 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2667881..2671001 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66689.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVHPLVDRAT SDMLIGPDWA MNLEICDMLN HEPGQTREVV SGIKKRLTSR TSKVQLLALT LLETIITNCG ELIHMQVAEK DILHKMVKMA KRKPNIQVKE 101: KILILIDTWQ ESFSGPQGRH PQYYAAYQEL LRAGIVFPQR PQITPSSGQN GPSTRYPQNS RNARQEAIDT STESEFPTLS LTEIQNARGI MDVLAEMMNA 201: IDGNNKEGLK QEVVVDLVSQ CRTYKQRVVH LVNSTSDESM LCQGLALNDD LQRLLAKHEA IASGNSMIKK EEKSKKEVPK DTTQIIDVGS SETKNGSVVA 301: YTTNGPKIDL LSGDDFETPN ADNSLALVPL GPPQPSSPVA KPDNSIVLID MLSDNNCESS TPTSNPHANH QKVQQNYSNG FGPGHQEQSY YGQGSSAPVW 401: NLQITQQPSS PAYGNQPFSP NFSPPASPHY GGQNNNVLAL PPPPWEAQSP SSSPQYSPTH PMQVTQVVIT THTHQPLGYN PQGGSPHATN NNNNNMFGMF 501: LPPMTGGHMP PPFGHNGHVT NNNYNPNMYG GYGGQAQPPQ QYLVEQQMYG MSLQDNGNNN TNPYQVSSHQ PPPMMKPMNK KPEDKLFGDL VELSKFKKPT 601: SGRAGSM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)