AT2G04750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin binding Calponin homology (CH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 4258 Blast hits to 2703 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 3436; Fungi - 331; Plants - 148; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1659762..1662748 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73447.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSYVGVLVS DPWLQSQFTQ VELRTLKSKF YSTKTRFGRV TVKHLPPVFA KLKYFNGKFD ENEIKTILDE SYPNRAKEVE FETFLRAFLS VQSRGSKGAS 101: SFLKTSTTTF HHSINESEKA SYVSHINSYL KDEPNLKSYL PINPTTNALF DLVKDGVLLC KLINIAVPGT IDERAINTKK ELNPWERTEN LSLCLNSAKA 201: IGCTVVNIGT QDIAEGTPHL VLGLIFQIIK IQLLADLNLK KTPQLVELVE ENQDVEELMG LAPEKLLLKW MNFHLKKAGY EKQVTNFSSD VKDGEAYAYL 301: LNALAPEHST NVTLEIKDPS ERATKVLEQA EKLDCKRFLS PKDIVEGSAN LNLAFVAQLF HHRNGLSDES PKVPISVAEM VTEDEETSRE ERCFRHWMNS 401: LGAVTYVDNV FEDVRNGWVL LEVLDKVSPG SVNWKHANKP PIKMPFKKVE NCNQVIKIGK ELNFSLVNVA GHDIMQGNKK LLLAFLWQLM RYTMLQILNN 501: LRSHCQGKDI TEADILNWAN RKVKKSGRTS QAVSFKDKNL ANGIFFLELL SAVEPRVVNW SLVSKGETQE EKNLNATYII SVARKLGCSI FLLPEDILEV 601: NQRMMLILAA SIMNWSLQQQ SDTESTVSDD TDVSSVTEEI SNLSTDDGSS DV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)