AT1G75300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NmrA-like negative transcriptional regulator family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to an isoflavone reductase | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 1595 Blast hits to 1591 proteins in 336 species: Archae - 8; Bacteria - 421; Metazoa - 0; Fungi - 508; Plants - 551; Viruses - 7; Other Eukaryotes - 100 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:28255552..28256927 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35620.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTEKSKILV IGGTGYMGEF IVEGSAKAGN PTFALVREAS LSDPVKSKTI QSFKDLGVTI LHGDLNDHES LVKAIKQVDV VISTIGHKQI FDQTKIISAI 101: KEAGNVKRFL PAEFGIDVER TSAVEPAKSL FAGKVQIRRA IEAEGIPYTY VVSNCSAGFY LRTLLQFESG LISHTRDKAI IFGDKNVPPR DKVTILGDGN 201: AKVVINKEED VAAYMIKAVD DLRTLNKTLY ISPPNNILSM NEMVTLWEKK IGKSLEKTHI SEEQILKSIQ VPIDVFKSIN HAVFVKGDQT SFTIEPWFGE 301: EASVLYPDVK YTSIDEYLSQ FT |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)