AT1G56040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.877 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT/U-box domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HEAT/U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: RNA metabolic process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G56030.1); Has 48380 Blast hits to 31280 proteins in 1863 species: Archae - 590; Bacteria - 5184; Metazoa - 24219; Fungi - 3107; Plants - 3498; Viruses - 126; Other Eukaryotes - 11656 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20960356..20962334 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57042.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSRRSFIGV CSIEEKRVLE KSKCLLNWLT QRNFEKIKDE IVRTIKSFPS ASILKSLVSC VFDMAMVENS YVLFARLCVE LFHELPPLPS DESHGDITTF 101: ERLFLRKCRI ELENASPKTE HLPLVYVDET NYYRFIKTVR VLAEVYKNSK ITETTRKSMI QVLMNPILPP ERITDAMNLF RSIIGKLADF HFSDEKFNQL 201: VRSSRVVELE GNYNEEVKLR KEAEDALAMK KEDVEMMEQL LESYKEEQGK LQLQAKALEH KLEAELRHRK ETETLLAIER DRIEKVKIQL ETVENEIDNT 301: RLKAEEFERK YEGEMILRRE SEIALEKEKK ELEEVKLKLE TYEREQENLS SEVRTWQDKY EQESSLRKLS EYALSREQEE LQIVKGLLEF YNGEADAMRE 401: ERDKALKTAK EQMEKRQPPS SFFCPITQEV MKDPHFAADG FTYEAESIRK WLSTGHQTSP MTNLRLSHLT LVPNRALRSA IEELV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)