AT1G55050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 2440 Blast hits to 1999 proteins in 271 species: Archae - 0; Bacteria - 138; Metazoa - 960; Fungi - 166; Plants - 162; Viruses - 14; Other Eukaryotes - 1000 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20542779..20545612 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103802.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||
| Length | 915 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEEENSSME ESCDEEFVCG DPKVDIRVGD EYQVEIPPMM SESQRAELLL NPLEFDSSCS FAVGLPVEVM WIETKCRDGD GLGSDNIDMN ESLKSLKRKR 101: SRRGGSDGNS GSKRRMNLEA VPEKSSSSWE DLEVDGFVLG LYTFGKNFAQ VQKLLESKAT GEILLFYYGK FYGSAKYKTW SNYLKKRSTR CIQGKKLYSD 201: WRLQLLLSRL IRSITDESKE QKLVDVSKSF AEGKKSLEEY INAVKKLVGL RCLVEAVAIG KDKEDLTVLT TKPVDVEQWF RVSSAVPAGL GEYNSLTVEG 301: IIEKLSGGSR VSKARCNDIF WDAVWPRLLH RGWRSELPKD QGYIKSKEHI VFLVPGVKKF SRKKLVKRDH YFDSISDILK KVVSEPELLE ETAEEEREEN 401: TYNQSKQEKH CYLRSPSSSS THMKFTVVDT SRFASRGKLY EFRELRIPSL ASQSKACRGD NNSSVERFKF ADERKCKRKQ KMEVVDEPMT FLILDTSVDK 501: GGHTSGIRRR RHLPKEAFGE SSQNQSGTSK DVNCEYLKGT DPGVEEETLE NVQQGRSKKI KQKFALLSES NKRHLVGSLP LRKRRRLSTC VRKDRKRSGE 601: SSVLKPPPLD QITNSHPKLH VDSMNLNTNQ SEENENIEIQ ERPETEPNGF CSISETVHEP SSSAQQQEPN GLRSSKEQGA LHDEPISLAQ QQEPNGLYSS 701: KEQGAFHEHS STEQQQDESN RLCLDKICSS KDLGTAQKEE QPIQLPPKSA SDKNSPSRDH GTTEERASLE QQEEEHKQQA NTDIPRRQST RKRPLTTRAL 801: EALESDFFTP KSKKTTTSKP RNRERSARIK HSANANNKTP GESDNSFHVK EAITSKPSDQ IKDSEPSFLV DKVTVTSSKH VEQIKDSEKV TTEFPKLPPI 901: VLKLPFRRGS RSNED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)