AT1G51900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of Vps4 activity in the MVB pathway protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G14830.1); Has 11301 Blast hits to 8001 proteins in 660 species: Archae - 97; Bacteria - 956; Metazoa - 3829; Fungi - 697; Plants - 524; Viruses - 57; Other Eukaryotes - 5141 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19279884..19282895 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92202.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||
| Length | 774 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGFSFSRRR KSNAFTWKVL KQLQSRLMLL KSQKYAKSRH LRADIVDFIR SNDSKSALFR TEQLLLVENA ITIYGFLLKF TDFILLRFSP SKKHSCLLVN 101: DDTSEAVSSL IFASVKCREI PELLIISELV GQRYGQRYVT TAIQVPPGNL VNTEIKEKLK STSVVSETDK CRVMEEIAKE SGYRLEILGL GYKSEIDNEV 201: FDLEEKNVMD ESLHEVYKFC LTDVDERSKK ETSMKDDYIE HKKSTRLLAE NAKKSGHSLE ILRPESKPET EKEVNEEEEK RVMDPDVDIS CYEESPHEVY 301: KFSLTDFEEE IMEDDYREDM KCRMLDDIVK NSGHRVEISR PEYYKPEIEK QVYEKEEKKV MDPDIYIRSY EESPNEVYKF SLTDLEEEIM ENDSIEGVKC 401: RMLDEIMKKS GHHLKISRPE YKPEIEKQVY EEEEKKVMDP DVDIRCYEES PHEVSKFSLT DFEEEIMEDD YIEALKCRML DDILKKSGHR LEISRRQYNK 501: PEIEIQVNEK EEKKVINTDM DIRYDDESPE EVETYSSLTD DEEERSKEDT SMEDVNHKHE VYKFSLTDIK EERSNEDTSM EDCCIEEAQV GKDQRVFRFR 601: ESSEEKRKSS SSPLSPLTEF RDMESLTYYM RQKGMHRRRR RSSTSPHCCH NVVYNEFKVT KEEEEEERQR LTTKRVHSKL HEYEQFLTQF KKKKEEENER 701: RRLSPKDFEP TLPDYDQVIT RFRVLEKEEE ERRRLATKHV HPKLPDYDQI ATKFKLLKEV EKERRRLLTK HSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)