AT1G31080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31090.1); Has 1333 Blast hits to 1052 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1333; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11091832..11092899 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41430.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRGANSASI PNDLILEILS RLPAKSTGRF RCVSKLWGSM LCHSYFTELF LTRSSARPRL LIGIHQDGDR FFFSCPQPQS PYDNSSIVLA ADFHMKFGRV 101: EDEWVYHILT LGTENVRWRE IICPFSYDPP REKPICINGV LYYISVGSYY SLIGCFDVRS EKFKFLYLSP DCFPNWSRKL INYKGKLGVT IMEDYHGGFP 201: LKLRMWVLED VEKEEWTRYA YTLRPENKVE DNDYVYVVGA TASGEIVLTK QNAYKPFYVF YFSPERNTLL SVEIQGVGEE WFYHNVYYFV DHVEDLRFDV 301: MKTTYAGTSR SPPKQSTSTS SREDHEVRTL AHQKEDRLTF ESVNQFDALR LLEDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)