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AT1G19060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G02770.1); Has 198 Blast hits to 197 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC068602EMBL:CP002684EnsemblPlants:AT1G19060EnsemblPlants:AT1G19060.1
entrez:838488GeneID:838488Genevisible:Q9LMC2Gramene:AT1G19060.1
hmmpanther:PTHR31260hmmpanther:PTHR31260:SF28HOGENOM:HOG000112307InterPro:IPR006462
KEGG:ath:AT1G19060OMA:VPIARPKPaxDb:Q9LMC2Pfam:PF04776
Pfam:Q9LMC2PhylomeDB:Q9LMC2PIR:B86324PRIDE:Q9LMC2
PRO:PR:Q9LMC2Proteomes:UP000006548RefSeq:NP_173340.1TAIR:AT1G19060
TIGRfam:TIGR01572TIGRFAMs:TIGR01572UniGene:At.51676UniProt:Q9LMC2
Coordinates (TAIR10) chr1:-:6582066..6583601
Molecular Weight (calculated) 32729.20 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.26
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MDWTMISGSR DESLHAARDY WRRLNESECF DIEGIEAPPG AIALIPYDCQ LPNSFHPLPL WVKLYASAGL HRFNMLEVLV NERSVGKLNI IVPIARPKGV
101: TTNERFIPCD CFSVDDKLPQ WPSHDSFNDR KRFYSVKESE LQNNDWINLY LELVLCAIQK VRISDSDLSK LKIVKAVIET KEDMVPPNER LNAKTAVVYI
201: TFKGLANARI AAGEHYERKA IIRRIFNEHT GHLSLLGDLI GEKKFVNIDP VTYFNSPAYL EDITHELPPE SPWMDILAGT GSMDQID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)