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ATCG00540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : photosynthetic electron transfer A
Curator
Summary (TAIR10)		 Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.
Computational
Description (TAIR10)		 photosynthetic electron transfer A (PETA); FUNCTIONS IN: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity; INVOLVED IN: photosynthetic electron transport in cytochrome b6/f; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cytochrome b6f complex, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome f (InterPro:IPR002325), Rudiment single hybrid motif (InterPro:IPR011054).
Protein Annotations
eggNOG:ENOG410IESTeggNOG:ENOG410XPENEMBL:AP000423EnsemblPlants:ATCG00540
EnsemblPlants:ATCG00540.1entrez:844748Gene3D:1.20.5.700Gene3D:2.60.40.830
GeneID:844748Genevisible:P56771GO:GO:0005506GO:GO:0009055
GO:GO:0009535GO:GO:0015979GO:GO:0020037GO:GO:0031361
GO:GO:0055114Gramene:ATCG00540.1HAMAP:MF_00610hmmpanther:PTHR33288
hmmpanther:PTHR33288:SF3HOGENOM:HOG000024481InParanoid:P56771InterPro:IPR002325
InterPro:IPR011054InterPro:IPR024058InterPro:IPR024094iPTMnet:P56771
KEGG:ath:ArthCp035KO:K02634OMA:HVGGNRGPaxDb:P56771
Pfam:P56771Pfam:PF01333Pfam:PF16639Pfscan:PS51010
PRIDE:P56771PRINTS:PR00610PRO:PR:P56771PROSITE:PS51010
ProteinModelPortal:P56771Proteomes:UP000006548RefSeq:NP_051072.1SMR:P56771
STRING:3702.ATCG00540.1SUPFAM:SSF103431SUPFAM:SSF49441SUPFAM:SSF51246
TAIR:ATCG00540tair10-symbols:PETATMHMM:TMhelixUniProt:P56771
Coordinates (TAIR10) chrC:+:61657..62619
Molecular Weight (calculated) 35358.90 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.09
Length 320 amino acids
Sequence (TAIR10)
(BLAST) 		001: MQTRNTFSWI REEITRSISV SLIIYIITWA SISSAYPIFA QQNYENPREA TGRIVCANCH LANKPVDIEV PQTVLPDTVF EAVVKIPYDM QLKQVLANGK
101: KGALNVGAVL ILPEGFELAP PDRISPEMKE KIGNLSFQNY RPNKKNILVI GPVPGQKYSE ITFPILAPDP ATNKDVHFLK YPIYVGGNRG RGQIYPDGSK
201: SNNTVYNATA GGIISKILRK EKGGYEITIV DASNGREVID IIPRGLELLV SEGESIKLDQ PLTSNPNVGG FGQGDAEIVL QDPLRVQGLL FFLGSVVLAQ
301: IFLVLKKKQF EKVQLSEMNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)