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AT5G67120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB020742EMBL:CP002688EnsemblPlants:AT5G67120EnsemblPlants:AT5G67120.1entrez:836847
Gene3D:3.30.40.10GeneID:836847GO:GO:0008270Gramene:AT5G67120.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF110HOGENOM:HOG000152468
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G67120OMA:QEEYTNVPfam:PF13639Pfscan:PS50089PhylomeDB:Q9FHA1
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_201513.1SMART:SM00184SMR:Q9FHA1STRING:3702.AT5G67120.1SUPFAM:SSF57850
TAIR:AT5G67120UniGene:At.55725UniProt:Q9FHA1
Coordinates (TAIR10) chr5:-:26787830..26789737
Molecular Weight (calculated) 31543.30 Da
IEP (calculated) 3.81
GRAVY (calculated) -0.96
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPNEDNSEI PDSPFSFMWL LFGDDWDLWD TYSPVDADDI SPDPTLDVNG DGPAIEPGSL LRTISWETTF EQDSLQSWND EQSETTSVVE YTDVSSHGNT
101: FTNEEETLER YWRNWLQSST NEQSETGSQE EYTNASSHGG TFIYEEETLE QYWRNWLQSS TNEQFETESL EEYTNPSSHG DIFTYEELLS ITDETGDERT
201: GLSEEVIDEN LIRRKYEKRS DDETKRCVIC QQKLKDNEEV SKLGCGHDFH FGCIKNWLMV TNKCPLCNRE VV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)