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AT5G62160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.933
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc transporter 12 precursor
Curator
Summary (TAIR10)
member of Fe(II) transporter isolog family
Computational
Description (TAIR10)
zinc transporter 12 precursor (ZIP12); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 1 precursor (TAIR:AT3G12750.1); Has 2095 Blast hits to 1976 proteins in 316 species: Archae - 2; Bacteria - 158; Metazoa - 583; Fungi - 630; Plants - 500; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GP2eggNOG:KOG1558EMBL:AB016880EMBL:AF369914EMBL:CP002688EnsemblPlants:AT5G62160EnsemblPlants:AT5G62160.1
entrez:836336GeneID:836336Genevisible:Q9FIS2GO:GO:0005385GO:GO:0005886GO:GO:0016021Gramene:AT5G62160.1
hmmpanther:PTHR11040hmmpanther:PTHR11040:SF35HOGENOM:HOG000157076InterPro:IPR003689InterPro:IPR004698KEGG:ath:AT5G62160KO:K14709
OMA:HMLPEAVPaxDb:Q9FIS2Pfam:PF02535Pfam:Q9FIS2PhylomeDB:Q9FIS2PRIDE:Q9FIS2PRO:PR:Q9FIS2
Proteomes:UP000006548RefSeq:NP_201022.1STRING:3702.AT5G62160.1TAIR:AT5G62160tair10-symbols:AtZIP12tair10-symbols:ZIP12TIGRfam:TIGR00820
TIGRFAMs:TIGR00820TMHMM:TMhelixUniGene:At.55680UniProt:Q9FIS2
Coordinates (TAIR10) chr5:+:24960107..24961263
Molecular Weight (calculated) 37573.50 Da
IEP (calculated) 7.29
GRAVY (calculated) 0.61
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRFRKTLVS AFVLCLVIFP LLVSAAEEEN QCGGSKGGSA AEKASALKYK IIAFFSILIA GVFGVCLPIF GLKTESNFFM YVKAFAAGVI LATGFVHILP
101: DATESLTSSC LGEEPPWGDF PMTGLVAMAA SILTMLIESF ASGYLNRSRL AKEGKTLPVS TGGEEEHAHT GSAHTHASQG HSHGSLLIPQ DDDHIDMRKK
201: IVTQILELGI VVHSVIIGIS LGASPSVSTI KPLIAAITFH QLFEGFGLGG CISEAKFRVK KIWVMLMFFA LTAPIGIGIG IGVAEIYNEN SPMALKVSGF
301: LNATASGILI YMALVDLVAP LFMNQKTQSS MKIQVACSVS LVVGAGLMSL LAIWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)