AT5G60470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 and C2HC zinc fingers superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G45260.1); Has 38003 Blast hits to 17147 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 35900; Fungi - 231; Plants - 711; Viruses - 1; Other Eukaryotes - 1160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24320614..24322790 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50486.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 450 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTASHSLALS MTKSTSPLIL TLTLSLQPPL KHPRKRETFQ EIQAYPNAEV ISLSPKSLMA TNRFFCEICN KGFQREQNLQ LHKRGHNLPW KLKQKTNKNQ 101: VKKKVYICPE KSCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVISDWKAHN KICGSREFRC DCGTLFSRKD SFISHRSFCD VLAEESSKFF 201: SVPSPLAANS TIATVTDTNN PILIQSQLDQ SSTGTADLNV NNNHTTLFGQ KFTNSNPTQQ QPNALALSSP PSPRSTSDSV HNLWKLQEEE CAHQWLLNEY 301: MNNNKNIFHK GIFKNQEDEI KKGNIYSGSN PTDGNIASLF SYNQEAVNMA SFSATTLLQK VAQTGTPSSS ETSTTMFGQM TSSIFNNTML NSYCLTAKNN 401: EEELTRDFLG VGSSEDQQRL HRHRFPSSVP LTANHDIPKL AATIVGRKQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)