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AT5G59230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : transcription factor-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5149eggNOG:KOG2652EMBL:AB016890EMBL:AY463598EMBL:CP002688EnsemblPlants:AT5G59230EnsemblPlants:AT5G59230.1
entrez:836041Gene3D:1.10.287.100Gene3D:2.30.18.10GeneID:836041GO:GO:0005672GO:GO:0006367Gramene:AT5G59230.1
hmmpanther:PTHR12694HOGENOM:HOG000152487InterPro:IPR004855InterPro:IPR009083InterPro:IPR009088InterPro:IPR013028KEGG:ath:AT5G59230
KO:K03122OMA:KNKWECKPANTHER:PTHR12694Pfam:PF03153PhylomeDB:Q9FIF4Proteomes:UP000006548Reactome:R-ATH-674695
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_200731.1SMART:SM01371SMR:Q9FIF4
STRING:3702.AT5G59230.1SUPFAM:SSF47396SUPFAM:SSF50784TAIR:AT5G59230UniGene:At.29239UniProt:Q9FIF4
Coordinates (TAIR10) chr5:+:23901555..23902379
Molecular Weight (calculated) 20884.20 Da
IEP (calculated) 3.94
GRAVY (calculated) -0.62
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLSTSDTSS SYNYVIDDVI NKSRCDLVYN GELDESVLSQ IQSMWKTKMI QAGAMSGTIE TSSASIPTTP VIVQTTLQTP DAIPLPEKKM SPKKESDGFY
101: YIPQQDGARD EAIVDVDENE EPLNEDDDDE EDDIDDDDMN IQHLVMCQFD KVKRSKNKWE CKFNAGVMQI NGKNVLFSQA TGDFNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)