suba logo
AT5G59105.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Defensin-like (DEFL) family protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Defensin-like (DEFL) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT1G15757.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:21272EMBL:AB016890EMBL:AB024027EMBL:AY084327EMBL:CP002688EnsemblPlants:AT5G59105EnsemblPlants:AT5G59105.1
entrez:836028GeneID:836028Genevisible:A8MRC8GO:GO:0005576GO:GO:0031640GO:GO:0050832Gramene:AT5G59105.1
KEGG:ath:AT5G59105OMA:FKFNPCEPaxDb:A8MRC8Pfam:A8MRC8PhylomeDB:A8MRC8PRO:PR:A8MRC8ProteinModelPortal:A8MRC8
Proteomes:UP000006548RefSeq:NP_680455.2TAIR:AT5G59105TMHMM:TMhelixUniGene:At.44872UniProt:A8MRC8
Coordinates (TAIR10) chr5:-:23862546..23863029
Molecular Weight (calculated) 14466.40 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.29
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MAITKKKLVV YTFTLLFIIS YVHCQSTSAS SPGFDNGEVC KQFKFNPCER GGDRGCTVFC TRKLFTRGEC RDEGCWCCPS FDIGESCQGF KFNPCERGGD
101: RGCTVFCKRK LVTRGECRDE GCWCCPGQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)