AT5G56560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD, F-box and Leucine Rich Repeat domains containing protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G56570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22899724..22901985 | ||||||||
| Molecular Weight (calculated) | 68778.00 Da | ||||||||
| IEP (calculated) | 9.17 | ||||||||
| GRAVY (calculated) | 0.13 | ||||||||
| Length | 607 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKQTRLSDL PDELLLKILS ALPMFKVTLA TRLISRRWKG PWKLVPDVTF DDDDIPFKSF ETFMSFVYGS FLSNDAQILD RLHLKLNQKY SASDINFWVQ 101: VAVNRSVREL RIDLFGKTLE LPCCLCSCIT LKELTLHDLC IKVVPAWFRL PSLKTLHLLS VKFSSDGFVA SILRICPVLE RLVVDGTKGV NVKIPNMDVP 201: NLRSLSFRST GELRIELLRK TLGLPTCLSS FRNLTELILH GLGIKGFPPC FRFASLKTLR LSSVKLSVAS LLKICPVLEC LIVENVMIPN IYVPSLRSLS 301: IRSSRELRID LSLKTFRTLK ELILHELSIK VVPPSFSLPS LEALHLLSVK FFGDESVASL LKICPVLEHL VVDQIKNENV MITNIDVPTL RNLSIRNSKG 401: KGTYVEGSKG FVIKAPSLTD LNFEDTLSNF LMFEPMPEVI KADIQVICDQ SKNFIGSLTS IQHLSLCSLT SKTPYPACTV FSSLKYLELC TCSARWANLF 501: ACILNAAPEL RSLKLKSKHK FNYNDPMTLW EEPAVVAKCL SEHLEIFEWR QYEGTEQERN VAGYILANAT CLKMATFSTR CRNRNHRMLK KLKSMDRVSK 601: ACRLVFD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)