suba logo
AT5G51190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 104 (TAIR:AT5G61600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20438eggNOG:ENOG410IYSReggNOG:ENOG410YIK7EMBL:AB023044EMBL:AY072345EMBL:AY086290EMBL:AY114590
EMBL:CP002688EnsemblPlants:AT5G51190EnsemblPlants:AT5G51190.1entrez:835193Gene3D:3.30.730.10GeneID:835193Genevisible:Q8VY90
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0010200Gramene:AT5G51190.1
hmmpanther:PTHR31677hmmpanther:PTHR31677:SF8HOGENOM:HOG000272710InParanoid:Q8VY90InterPro:IPR001471InterPro:IPR016177iPTMnet:Q8VY90
KEGG:ath:AT5G51190OMA:QADACPLPaxDb:Q8VY90Pfam:PF00847Pfam:Q8VY90Pfscan:PS51032PhylomeDB:Q8VY90
PRIDE:Q8VY90PRINTS:PR00367PRO:PR:Q8VY90PROSITE:PS51032ProteinModelPortal:Q8VY90Proteomes:UP000006548RefSeq:NP_568755.1
SMART:SM00380SMR:Q8VY90STRING:3702.AT5G51190.1SUPFAM:SSF54171TAIR:AT5G51190UniGene:At.19728UniProt:Q8VY90
Coordinates (TAIR10) chr5:-:20800708..20801373
Molecular Weight (calculated) 24578.10 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.61
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSHQQQQE QDQSALDLIT QHLLTDFPSL DTFASTIHHC TTSTLSQRKP PLATIAVPTT APVVQENDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)