AT5G50270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.492 endoplasmic reticulum 0.382 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20457487..20458873 | ||||||||
| Molecular Weight (calculated) | 43133.70 Da | ||||||||
| IEP (calculated) | 6.50 | ||||||||
| GRAVY (calculated) | 0.06 | ||||||||
| Length | 381 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRISGLPDE LLLRVLSLLP NVKDVVVTMV LSKRWQFLWM MVPKLVYDDS YQNLEYGKFS RFVDRSLFMR KAPGIETLHF KLGQNCGNGD IQWWIRAASK 101: FCFRELIIEI NCSTSASPSI LPRSLYTECR MLVTLKLKKA VLVDVSSPTC FPSLKNLSLV SVKYPGNEFV KSLLSSCHVL EDLVVEQCIN DNVTIFSVKV 201: PSLKSLVLRT SKERAPDGES GFVVEAPSLE YLDIDQTGGF CVIENGMPNL AEAYVSVLHH HPDMYPIRCV FHRLVHITLC TCDDEWLNLL ACLLKGSPKL 301: ISLKLEKHHG HLICSPSPLR DDLSSVPECV LSSLETVEWV DYEGTEAERQ LVEFILRNGS CLKKFVISPE SVNPDKKYEM I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)