AT5G28235.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ulp1 protease family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:10201271..10203335 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65107.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||
| Length | 568 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYPQWSDSAE NHDTALDNLL KDIIHNRLQS HAWTHVAARR KRKQNQESSN EDGESKVIES TPADDVSHKK QRTGKAHIKV DEEEKTSLLD IWNMLEKMNV 101: TISDMDKNAS SRLDGLEKKV TCLEASVKTR FEAVETDMRV LKESQPPVVS NEAATSNNND EYEANSNQCS WIVEEKPGSV DGLPIQRVVK KTVNSVKNKE 201: AATKVLTKKK VAKSDKKKTI VNVEKVEKPK PEMKKTVVKV EKVDSPKPLQ KKSVAAPTTK TFDDDVVDVT DKVNADNLKM ASSSEETFSN PTDQMANKAT 301: ADALRALQEG LDNLDGITSK RRRVPQLAGS QKYPYVGNST VKRIITDVPS SSSVPEHLQP VSDDQFDRLK DWLEPDFEKE GLNTNNFNAR FYWQIMTPRN 401: DWPTERYGWL KDYHMGAAMS LFRRRFNRDP SKYPNQRITF LDQDLISTML KDYKQFQPDY RCFKFREYYE DQVNGTAHCE AATNKKWFVD VDHLYAYLFV 501: NGNHWVALDI DLTKKRVNVY DSIPSLTTDT EMAIQCMFVM TMIPAMLSSF IPSKQRRRSY SKLELLIS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)