AT5G21080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.905 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Uncharacterized protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Uncharacterized protein; BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 304 Blast hits to 292 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 137; Fungi - 19; Plants - 133; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:7158035..7162906 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114112.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 1025 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVVSRTVFP VCESLCCFCP ALRARSRHPV KRYKHLLADI FPRSQDEQPN DRKIGKLCEY AAKNPLRIPK ITTSLEQRCY KELRMEQFHS VKIVMSIYKK 0101: LLVSCNEQML LFASSYLGLI HILLDQTRYD EMRILGCEAL YDFVTSQAEG TYMFNLDGLI PKICPLAHEL GEEDSTTNLC AAGLQALSSL VWFMGEFSHI 0201: SVEFDNVVSV VLENYGGHSQ SSTSAVNQDN KVASIDKELS PAEAETRIAS WTRIVDDRGK AIVSVEDAKN PKFWSRVCLH NLAKLAKEAT TVRRVLESLF 0301: RYFDFNEVWS TENGLAVYVL QDVQLLIERS GQNTHFLLSI LIKHLDHKNV LKKPRMQLEI VYVATALAQQ TKVLPSVAII GALSDMIRHL RKSIHCSLDD 0401: SNLGNEMIQY NLKFEAVVEQ CLLQLSQKVG DAGPILDIMA VMLESMSNIT VMARTLIAAV FRTAQIIAAI PNLSYENKAF PDALFHQLLQ AMVCADHESR 0501: MGAHRIFSVV LVPSSVSPSS VLNSRRPADM QRTLSRTVSV FSSSAALFRK LKLESDNSVD DTAKMERVST LSRSTSKFIR GESFDDEEPK NNTSSVLSRL 0601: KSSYSRSQSV KRNPSSMVAD QNSSGSSPEK PVIPLRLSSH QICLLLSSIW VQSLSPHNMP QNYEAIANTF SLVLLFGRTK HSSNEVLVWS FQLAFSLRNL 0701: SLGGPLQPSR RRSLFTLATS MIIFSAKAFN IPPLVNSAKT SLQEKTVDPF LQLVEDCKLD AVFYGQADQP AKNYGSKEDD DDASRSLVTI EEASQNQSRE 0801: HYASMIMKFL GKLSDQESSA IKEQLVSDFI PIDGCPVGTQ LTESPVQVYR SEEKNNKPRE NAETQLLIPE NDAVPSPPEE QFSLDIQPNA KTAFLLSIDE 0901: LLNAVSQTTA QLGRYSVSDP PDMTYTEMAG HCEALLMGKQ EKMSFMSAKS NKFSSSQTKE AVALPCSGGN PFVDQRSSWE MMGLGAPAAS NICVTEYQNQ 1001: PPFFNPPSST PFDNFLTAKP LVPLD |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)