AT5G04700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.607 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1354240..1356754 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75344.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMSSNYLDA TLKETFRRSP FKFANTKVPH AGLGDSVSPI KEVPEEEEVP NDPVNIQIPF IESALSTSRL RGKNTNVYYE YIQLSQGISQ GRVEIVKDFL 101: NHHPDSVDEW INLYETPLLK ACACGKPEIV KELLRRMTPE QMLPKMSQNA SYHTPLTVVA VSGNMEIAEA LVAKNPKLLE IPGINGQIPV VVAVENTQME 201: MARYLYTRTP VQVLLDQDGY HGSLLFLNAI FYKMLDIALD LFNMSRRLAV TKHSQIESIP IIVLASKPDL FPGGCYLGPL TRFIYSWIQV KLPTLPQPSR 301: SNRDQQNTLM RKLLKGLSKW TGIDEVYRLK VMHLQAKKLL LGISEETLAL GLKERSETVD EALLFAVRYG NVDFLVEMIR NNSELLWSTR TSSSSTLFLL 401: AVEFRQEKVF SLLYGLDDRK YLLLADKDCD GNGVLHLAGF PSPPSKLSSV VGAPLQLQRE LQWFKEVERI APEIEKERVN TEEQTPIEIF TKEHQGLRQE 501: AEKWMKDTAM SCSLVAALIV TVTFAAVFTV PGGTDDNSKG KPFHLRDRRF IIFIVSDLIS CFASCTSVLI FLGILTARYS FDDFLVFLPT KMIAGLSILF 601: VSIAAMLIAF SSALFTMMGK EGKWIVAPTI LFACLPALLF VLLQYPLLKE MIFSTYGKGI FDRNMKCWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)