AT4G31520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.823 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SDA1 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G13160.1); Has 8756 Blast hits to 5682 proteins in 453 species: Archae - 14; Bacteria - 613; Metazoa - 3270; Fungi - 1126; Plants - 516; Viruses - 196; Other Eukaryotes - 3021 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15278281..15281739 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79094.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 698 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLAHVTPFY PNQLAAFPAQ LTDLLRTSCL AMPSGLRYQV AQSLILLMNR KSLVIEDLLA LFLDIQTLGD KNLRKLAFSH IVQTIRKMSI TDPRHKSLHK 101: IVFSMLEQED ETKAKRALVT LCELHKKKVW FGDKHDRVAI AICEACFHTS PRIRISSLRF LLDYDNINDE DDSDLRLCLT ERLFTSKKKK QAKLQRAMRS 201: IKRKQRASSE NTTSTYSPLN HLNDAQNFAE RLLPLIRPKP DESTVETNDK SSGETDDKST GETYERRETR LMIIKVIART IGLHKLLLFK FYTYLQAYAK 301: DGVKDITQIL AAAVQACHDG VPSDAVEPLF KQIVNKFLHD RSSPEAIPVA LNVVREMFLR IPELMTEDLL HDLAQYKTDK KYRTHRKAIS AASASLIALF 401: REINPLLLVK KDRGRPGGPI ARPKKYGEVN VFSNVPNVDL LQESDDDEVA LPGSDDIEQE LITEDEAEED SNDGDDMNNT EDDTLVSGDE EEEKNDSDEA 501: ETDWENEEDE GEASVEGSGN REKAKGKKRK LVDFDASLLA ADTSLRALKR CAEAEREQTS FAERDGILSN EDFRKIKEVK GKKDAKLALA RKGLKVPDSD 601: KLSKKLVNPA KLEAHIRQKL IKEERLELVK AGREDRGKYK SKTAIKQKKT GGSSNRQKEH KKNMPLAAVR SKAGKAKRVK KMKNSHSGSQ FRGRKAWK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)