suba logo
AT4G14280.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.460
peroxisome 0.201
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18980.1); Has 563 Blast hits to 446 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 563; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWJEeggNOG:ENOG41104VJEMBL:CP002687EMBL:DQ446835EnsemblPlants:AT4G14280EnsemblPlants:AT4G14280.1entrez:827069
Gene3D:1.25.10.10GeneID:827069GO:GO:0016021Gramene:AT4G14280.1hmmpanther:PTHR33115hmmpanther:PTHR33115:SF3InterPro:IPR000225
InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT4G14280OMA:ETVNGDCPhylomeDB:Q1PE83Proteomes:UP000006548RefSeq:NP_193164.2
SMART:SM00185SMR:Q1PE83SUPFAM:SSF48371TAIR:AT4G14280TMHMM:TMhelixUniGene:At.54316UniProt:Q1PE83
Coordinates (TAIR10) chr4:+:8222518..8225074
Molecular Weight (calculated) 88855.20 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.02
Length 798 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDRPTDVVV EVGSSGRTIF RPDETPTPEP RRPTQLPPVP APEKKLTLFA LRLAVLEKIA SGLGSLGFVW ATVVLLGGFA GSLEITDFWF VTVILVIEGA
101: RLFSRSHELE LQHQSKYTIS GINIFRFLVK QINQIFHQVA HIAGDDNRPS VRETRTVQRN SGHITRTRTW KSSDVPMLPY TGWVFVSRNV SRIFYWLQIA
201: SAFASIFIST IQLIKQDYGG NDLKPKSTNL HAALTLFYSL ALAEALLFLV EKAYWEYMIS VIHILEKVNE ECGLERFGTG SVRRFFYDAY SRCLNGSIFD
301: GLKMDMVIFA MELLVANSLD EQLIGAEILS IFSTHDDYSV DTLQKIGTNL AIIERLVEML NWRDKNQEDV RMSAAEILSR LASKKQNSLR VAGIPGAIES
401: ISSLLESTRD SGEATDEIGE QSINHSNLWT LNNLGLLILK RLARDHENCG KIGKTKGLLS KIIDFTYAEK NLLENPNVAV AEPYKILAVK RSLKLLKKLV
501: STTGTTGKNL RMTISGIVFT VSNIRETLHH GKSQPHLQKL GAEILTFLAF EEGATEKIGG TGGVLKGLLC IFLNNEIPKD KSGVRVSAGE SVAMLAQGSK
601: SNCQKILRAN VLKGLVEALD NPLIRLNAAR ILRNLCAYTA PGQFNEQMKE VIKSAGATVL KAIKSEERKP QEVMVGLAPH ILKLMNTPEE LRGMFEEAGV
701: TEEELAKALI NILKRYEQPV PKVPRIRRFA IELTIAMMKA NVETVKTFQN LEMKNELETV FETAAELENF DIFSGTVGLA RHGSTINELI EEAMLLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)