AT4G14140.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA methyltransferase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA methyltransferase 2 (DMT2); FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase family protein (TAIR:AT4G08990.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8146345..8152131 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 174835.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEMETKAGKQ KKRSVDSDDD VSKERRPKRA AACTNFKEKS LRISDKSETV EAKKEQILAE EIVAIQLTSS LESNDDPRPN RRLTDFVLHD SEGVPQPVEM 0101: LELGDIFIEG VVLPLGDEKK EEKGVRFQSF GRVENWNISG YEDGSPVIWI STALADYDCR KPSKKYKKLY DYFFEKACAC VEVFKSLSKN PDTSLDELLA 0201: AVSRSMSGSK IFSSGGAIQE FVISQGEFIY NQLAGLDETA KNHETCFVEN RVLVSLRDHE SNKIHKALSN VALRIDESKV VTSDHLVDGA EDEDVKYAKL 0301: IQEEEYRKSM ERSRNKRSST TSGGSSRFYI KISEDEIADD YPLPSYYKNT KEETDELVLF EAGYEVDTRD LPCRTLHNWT LYNSDSRMIS LEVLPMRPCA 0401: EIDVTVFGSG VVAEDDGSGF CLDDSESSTS TQSNDHDGMN IFLSQIKEWM IEFGAEMIFV TLRTDMAWYR LGKPSKQYAP WFGTVMKTVR VGISIFNMLM 0501: RESRVAKLSY ANVIKRLCGL EENDKAYISS KLLDVERYVV VHGQIILQLF EEYPDKDIKR CPFVTSLASK MQDIHHTKWI IKKKKKILQK GKNLNPRAGI 0601: APVVSRMKAM QATTTRLVNR IWGEFYSIYS PEVPSEAINA ENVEEEELEE VEEEDENEED DPEENELEAV EIQNSPTPKK IKGISEDMEI KWDGEILGKT 0701: SAGEPLYGRA FVGGDVVVVG SAVILEVDDQ DDTQLICFVE FMFESSNHSK MLHGKLLQRG SETVLGMAAN ERELFLTNEC LTVQLKDIKG TVSLEIRSRL 0801: WGHQYRKENI DVDKLDRARA EERKTNGLPT DYYCKSLYSP ERGGFFSLPR NDMGLGSGFC SSCKIRENEE ERSKTKLNDS KTGFLSNGIE YHNGDFVYVL 0901: PNYITKDGLK KGSRRTTLKC GRNVGLKAFV VCQLLDVIVL EESRKASKAS FQVKLTRFYR PEDISEEKAY ASDIQELYYS QDTYILPPEA IQGKCEVRKK 1001: SDMPLCREYP ILDHIFFCEV FYDSSTGYLK QFPANMKLKF STIKDETLLR EKKGKGVETG TSSGMLMKPD EVPKEKPLAT LDIFAGCGGL SHGLENAGMY 1101: LYSHVMHILL SSKHLKTFIK MHVLCNKVYL LQSGRSSMKS QLVMRLNKTI LKQRFLLTTA MAIMEKCGDV DDCVSTVEAA ELAAKLDENQ KSTLPLPGQV 1201: DFINGGPPCQ GFSGMNRFSH GSWSKVQCEM ILAFLSFADY FRPKYFLLEN VKKFVTYNKG RTFQLTMASL LEMGYQVRFG ILEAGTYGVS QPRKRVIIWA 1301: ASPEEVLPEW PEPMHVFDNP GSKISLPRGL RYDAGCNTKF GAPFRSITVR DTIGDLPPVE NGESKINKEY GTTPASWFQK KIRGNMSVLT DHICKGLNEL 1401: NLIRCKKIPK RPGADWRDLP DENVTLSNGL VEKLRPLALS KTAKNHNEWK GLYGRLDWQG NLPISITDPQ PMGKVGMCFH PEQDRIITVR ECARSQGFPD 1501: SYEFSGTTKH KHRQIGNAVP PPLAFALGRK LKEALYLKSS LQHQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)