AT4G09250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPla/RYanodine receptor (SPRY) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 549 Blast hits to 535 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 115; Plants - 74; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5876687..5878978 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38894.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 349 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEENEEEEEL RPTALYTVGG SDEFTFVSPD GLSGQYTGPD HDGVVLQTEN PAPTNCLAYY FEVHIMNAGE KGEIAIGFSK EHIYSEGYTV RSCAYIGNSG 101: LICSQNGDGD RTVAKASDTY TTGDLVGCGI DSVSQEFFFT KNGTIVGTIP RQFRRPVYPT IVLHSQNEAV TVNFGGQIAF SFDFEHFEES LRVKKEREIE 201: KISMSRSISH GLVKTYLLRY GYEDSFRAFN LAASRHTVIA QENSFDEYEL HQRKKLRELI MTAEIDDAIA ALKDRYPQLI EDCSALFECE TIEESGAAYL 301: LGETQKNIVA AAVSEAILST NPATRDQQSA SLERVLRQFE ATCSLYARE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)