AT4G08550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : electron carriers;protein disulfide oxidoreductases | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
electron carriers;protein disulfide oxidoreductases; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: glutaredoxin-related (TAIR:AT3G11920.1); Has 5684 Blast hits to 4425 proteins in 725 species: Archae - 19; Bacteria - 1130; Metazoa - 1053; Fungi - 285; Plants - 562; Viruses - 105; Other Eukaryotes - 2530 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:5444345..5446825 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72885.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||
| Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESSPKQQNT EEERKSAEII AKEVSPKQQN VEEERKSAEI IAKEVSPKHN VEKKEEEFTR KPVVEIEEEE EEMESIDIHE EEEGDNNVSL DEIMSVDSSD 101: DDDDSESSAE ITKACEETVV DERSGISQES NSSTSSAWTE KAAAIKNFVR AKSEVAVHTM IRRLSGKLSI DNAAHGTKDD EVESPKTEGK SLWNPLSYLK 201: MMQNDEDLVY REEETVFEPV VMKGRIILYT RLGCEECRGC RLFLHEKRLR YVEINIDIYP TRKVELEKIS GGDVVPMVFF NEKLVGSYKE LKVLEESGEL 301: EEKIKHLIEE TPPREAPLPP FSGEDDASSK GPVDELALIV LKMKPCVVKD RFYKMRRFKN CFLGSEAVDF LSADQRLERD GPRPIVEIAS RLRLVYRAIL 401: EAYTSPDGKH VDYRSIHGSE EFARYLRIIQ ELHRVELEDM QREEKLAFFI NLYNMMAIHS ILVWGHPAGT FDRTKMFMDF KYVIGGYTYS LSAIQNGILR 501: GNQRPMFNPM KPFGVKDKRS KVALPYAEPL THFTLVCGTR SGPPLRCFTP GEIDKELMEA ARDFLRCGGL RVDLNAKVAE ISKIFDWYGV DFGNGKEEIL 601: KHASTFLEPQ LSEALLDCLV DTQFEVKYQP YDWGLNN |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)