AT4G03480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.855 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 20363 Blast hits to 10320 proteins in 485 species: Archae - 23; Bacteria - 1523; Metazoa - 11338; Fungi - 1558; Plants - 2584; Viruses - 50; Other Eukaryotes - 3287 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1546024..1548871 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72991.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRSHLLRAT PEASPLKPAS SPSNCRLSLS PVELRLYFIR DDDFKVKVDI FKTSYQNSLF ELPCCDKSGD HHTHSDLQTK ARLDTIQVHR STVVCLDTES 101: VPEFLTSLRF SDLFNLPGEY VPMNPEIFSA MRAGNIELLE KLKSYETPMA CLKSDGGDSV LHLAAASGHL ELVKNIITEC PCLLLEPNSK YQIPLHVAAR 201: AGRSAVVKAL VASVLYFSPR VPEEDRDRLN IYVLKDIDGD TPLHAALKDL HEKAEVSHLL RYQERIRKLS LSHLIMHWRR SRCISFSDAS TRQMETAACL 301: VNADQHASFL ANKDGTSPLY LAVEAGNVSL VRAMLNRPGN KIQGKTSTLA SQLEGRKSLL HAALKAKNTD VLNVILNDDP SLVNERDEEG RTCLSVGASM 401: GYYKGICKLL DRSTKSVYEC DKDGSFPIHM AVEKGHLKVV KEILKRCPDS KELVNKQGQN MLHIAAKSAK VGSFLLGYIR RLDTENHLIE EQDVDGNAPL 501: HLATINWRCR TVDKLAAFAS TETKILNIQN KDGLRPLDIA ELNLQPDYVL RERLTLMVLL CVYAPKSVGW LPTSGMTLRS RSEPLDAKKY KDHINALLLV 601: ATLVATVTFA AGFTIPGGFN SSAPNMGMAT LADDSTLFFF LVLDTLAMQS SIVAIVALI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)