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AT4G02300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02320.1); Has 2686 Blast hits to 2624 proteins in 317 species: Archae - 6; Bacteria - 574; Metazoa - 1; Fungi - 202; Plants - 1878; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02300-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IF38EMBL:AF075597EMBL:AL161494EMBL:CP002687
EMBL:DQ056637EnsemblPlants:AT4G02300EnsemblPlants:AT4G02300.1entrez:827708Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:827708
Genevisible:O81415GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545GO:GO:0043086GO:GO:0045330
GO:GO:0045490GO:GO:0046910GO:GO:0050829GO:GO:0071944Gramene:AT4G02300.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF25HOGENOM:HOG000217409InParanoid:O81415InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050
InterPro:IPR012334InterPro:IPR033131iPTMnet:O81415KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT4G02300OMA:HSAFYRC
PaxDb:O81415Pfam:O81415Pfam:PF01095Pfam:PF04043PhylomeDB:O81415PIR:T01418PRIDE:O81415
PRO:PR:O81415PROSITE:PS00503ProteinModelPortal:O81415Proteomes:UP000006548RefSeq:NP_192139.1scanprosite:PS00503SMART:SM00856
SMR:O81415STRING:3702.AT4G02300.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT4G02300TIGRfam:TIGR01614TIGRFAMs:TIGR01614
TMHMM:TMhelixUniGene:At.54096UniPathway:UPA00545UniProt:O81415
Coordinates (TAIR10) chr4:-:1009366..1013034
Molecular Weight (calculated) 59827.00 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.26
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MINNHPIREK PKHIIFNLLS LIFFLIFLST VVSSQSPSYT THKTQRLTET KTIPELIIAD LNLTILKVNL ASSNFSDLQT RLFPNLTHYE RCAFEDCLGL
101: LDDTISDLET AVSDLRSSSL EFNDISMLLT NVMTYQDTCL DGFSTSDNEN NNDMTYELPE NLKEIILDIS NNLSNSLHML QVISRKKPSP KSSEVDVEYP
201: SWLSENDQRL LEAPVQETNY NLSVAIDGTG NFTTINDAVF AAPNMSETRF IIYIKGGEYF ENVELPKKKT MIMFIGDGIG KTVIKANRSR IDGWSTFQTP
301: TVGVKGKGYI AKDISFVNSA GPAKAQAVAF RSGSDHSAFY RCEFDGYQDT LYVHSAKQFY RECDIYGTID FIFGNAAVVF QNSSLYARKP NPGHKIAFTA
401: QSRNQSDQPT GISILNCRIL AAPDLIPVKE NFKAYLGRPW RKYSRTVIIK SFIDDLIHPA GWLEGKKDFA LETLYYGEYM NEGPGANMAK RVTWPGFRRI
501: ENQTEATQFT VGPFIDGSTW LNSTGIPFSL GF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)