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AT3G62430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.865
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein with RNI-like/FBD-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G54160.1); Has 1224 Blast hits to 1202 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10730eggNOG:ENOG410JW7KeggNOG:ENOG411056YEMBL:AL162507EMBL:CP002686EnsemblPlants:AT3G62430EnsemblPlants:AT3G62430.1
entrez:825416Gene3D:3.80.10.10GeneID:825416Genevisible:Q9LZP7Gramene:AT3G62430.1hmmpanther:PTHR31900HOGENOM:HOG000015201
InParanoid:Q9LZP7InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9LZP7KEGG:ath:AT3G62430
OMA:ASSKCKVPaxDb:Q9LZP7Pfam:PF00646Pfam:PF07723Pfam:Q9LZP7PhylomeDB:Q9LZP7PIR:T48035
PRO:PR:Q9LZP7ProteinModelPortal:Q9LZP7Proteomes:UP000006548RefSeq:NP_191802.1SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT3G62430TMHMM:TMhelixUniGene:At.54037UniProt:Q9LZP7
Coordinates (TAIR10) chr3:-:23093795..23095304
Molecular Weight (calculated) 49902.00 Da
IEP (calculated) 6.77
GRAVY (calculated) 0.13
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRISNLPDG VIYRVISLLS TKEATCLKYT SKNWLNLVTI IPIAVFVDSS ASAISASFKD FADRIMLARL ASHRIRRFSL KLQSLNFAQY KTVNDCLRNV
101: LECGVLDLEL DINVRGDYSL PSEIFTCKSV VKMKLGSGFV IDILPKNAWL PALKTLLLDT VRFEFDNTAG CSFTKLISAC PVLEELVIDG HNCEDWKWSR
201: RVSSQILKRL TIRRKEWVHD GSSFEPISLD IPSLEYFKYF DTLRDSYPVV KLNSLVEAKL ELPSLYIGDT YNVRNLIKGL KNVQILRLGA VDTMHLFWVF
301: REAVPVFENL FHLSVSTHDA ICWDDLRILL EKSPNLKTLT IEALHYHGYG DENSVCECLD GYSFLLSCPI EILKITEFGG EIEEMEQVEY VLENLLCLVL
401: LEIHVKTKKI DRKLQILADL LMLPRASSKC KVQVKFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)