AT3G61730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.844 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : reduced male fertility | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REDUCED MALE FERTILITY (RMF); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36000.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22848427..22850475 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39752.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 354 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTRSSDAEG DSRGKMIAPV GEGNGGRKRK LVQSNEQKND IQREEDGRAK RRIVQSSDQK NGKILRGIRG CVSPRCSAQT YQSRFSWYEQ DIWTYISRFL 101: DGKSLVKLGA TNKWFYKIAM EDTVWRFACL RDLQVPVPFP VSSTWIKIYA SAFDGSHSYL FRQKEKHIGA FVLDSRTSLL TESLSGRLKF PREGTIERML 201: QSSGSCLIND IKSGIWIADL QLVRCPVCDL STCDGTMQTL DARHIELFLS EGYKDGSWDY NLIGSHKLQK NASAACGAIF DLKHLKESSY SGILNLKSWT 301: GESNDSQPKA VIAPHAVAVH TRLQENEGIL VKYHTMKAGT DGDIVSIRIS QQLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)