AT3G55100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.712 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC-2 type transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: white-brown complex homolog 19 (TAIR:AT3G55130.1); Has 392721 Blast hits to 356813 proteins in 4114 species: Archae - 7219; Bacteria - 309703; Metazoa - 8988; Fungi - 6487; Plants - 5627; Viruses - 12; Other Eukaryotes - 54685 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20420352..20422340 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74387.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 662 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQRDAVIDV DESEIPPIPF VLAFNDLTYN VTLQQRFGLR FGHSPAKIKT LLNGITGEAK EGEILAILGA SGAGKSTLID ALAGQIAEGS LKGTVTLNGE 101: ALQSRLLRVI SAYVMQEDLL FPMLTVEETL MFAAEFRLPR SLSKSKKRNR VETLIDQLGL TTVKNTVIGD EGHRGVSGGE RRRVSIGTDI IHDPIVLFLD 201: EPTSGLDSTS AFMVVQVLKK IARSGSIVIM SIHQPSGRIM EFLDRVIVLS SGQIVFSDSP ATLPLFFSEF GSPIPEKENI AEFTLDLIKD LEGSPEGTRG 301: LVEFNRNWQH RKLRVSQEPH HNSSSLGEAI NASISRGKLV STSYRSIPSY VNPWWVETVI LAKRYMINWT RTPELIGTRV FIVMMTGFLL ATVYWKVDDS 401: PRGVQERLSF FSFAMATMFY SCADGLPAFI QERYIFLRET AHNAYRRSSY VISHSLVTLP HLFALSIGFA ATTFWFVGLN GGLAGFIYYL MIIFASFWSG 501: CSFVTFVSGV IPNVMMSYMV TFGYLSYCLL FSGFYVNRDR IHLYWIWIHY ISLLKYPYEA VLHNEFDDPS RCFVRGNQVF DNTIMEGVSE TTKAKLLETM 601: SGYLGMELTE STCLTTGSDL LKQHGIEQLD KWGCLWVTLA WGFFFRILFY FSLLLGSKNK RA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)