AT3G54530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54520.1); Has 159 Blast hits to 159 proteins in 50 species: Archae - 2; Bacteria - 26; Metazoa - 55; Fungi - 5; Plants - 20; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20186145..20187509 | ||||||||||||||||
| Molecular Weight (calculated) | 38591.20 Da | ||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||
| Length | 332 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENLKADGQE TSNFKTISIS VGMGCNYSKK GSEKLSCNMV SPCPGSFGRS SFAEAKKRLE KLEQDYQHTY EKYTELQSDR YMYYIAFQRP GHHSRWVGYC 101: IDHIENVVEQ LQNVLDKLNT EEASQRGRET PTNGKQFFLT HGCKSLAQEN MVLQKLKAET KEQYTDGLCQ ETIDVKRINW EFICIQRIVP QNSNKKSVHD 201: LLRRVNETQK LTEKAISNGA LMGNLTSLDN MKNSTSDLIK IVTNVHRELE KEKIELENIL QDRIHFARKN EKGYIEKIRV LREKCKCIVE RRDAEKKYLL 301: DLEKNFRDMN KTASQRKGCR KGNFRDVPLS VQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)