AT3G30200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant transposase (Ptta/En/Spm family) | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant transposase (Ptta/En/Spm family); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT1G40087.1); Has 256 Blast hits to 254 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11827752..11834262 | ||||||||||||
| Molecular Weight (calculated) | 57648.10 Da | ||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||
| Length | 510 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFVLDKLIG QDASNGHRRR NPWKRLSIVQ EFWFLPASFS SGFRHHHHTV SPIDLATSWR AYRENLQPST VRGIPDVSIN PDPKSVECPL ESLELDLAHY 101: EVPAPTPSAN SYLVYAADNA ENPRSLSASG SFNDSTPKAA QRNSEDSGVT VDGSPSAKVV LCLVAWIMDF TDSETQQPDD LPNLETDYTM PPPLAPECKS 201: FKWKIEVIGQ LSNDVMLLPI NYTDWRLVSP HIKDRAWAVI QSKFRFDDPM MRKDYVMGAL GSRCKDVKLR FWREHKRNNL NETLENRPEK VPEDQWSHLV 301: HLRFTDKWRK MQERNTKNQK NHIMPHLCGR KSFSRKRDEI KIKTGKTPCR VEFFIESRKK HDGSFVSDEA KLRAIALTTL LNLNPQVTYN GTASLDDEYS 401: QVFGPERPGR VHCVGRGPTP SRLVRHSNAT RRKDIENSEL VAQLKTQVKT LGDQVNAMST FLGQILGNST GEQASAWAAN FATAFANIPN PAFVNISNLP 501: NPQERDGGAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)