AT3G28610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.924 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28600.1); Has 20028 Blast hits to 18965 proteins in 2818 species: Archae - 1192; Bacteria - 7323; Metazoa - 2850; Fungi - 2545; Plants - 2245; Viruses - 32; Other Eukaryotes - 3841 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10724990..10726414 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54800.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.36 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGNMFGSSL ASLFFLWATI QQIFPNHLKI AIKEFFLSTI QQISFAKRFS DKFINFFSPY VQINFSEYED YRVNHAFDPI ETYLGAKATD KAKHLRASQV 101: RESKGLVLKR DETKVRDEYE GIRVWWEMET DSAGYKTLKL TFHRRSRDIV TNSYIKYVVE EGKSIDAKNK KMKLFTNNPS SHWGSSKTSF WRYIDFEHPA 201: TFETLAMDPK KKEQILNDLA AFNNGKDYYK KIGKAWKRGY LLYGPPGTGK STMIAAMANL LNYSIYDLEL TAIQNNSELR KILTATSNKS IIVIEDIDCS 301: LDLTGKRKKK ESNLMIWRKD GDQDNEENKS FVTLSGLLNF IDGIWSACGQ ERIIVFTTNH LAKLDPALIR RGRMDMHIEL SYCTFEAFKT LAKNYLDLDS 401: HPLFSKIESL MKETNIAPAD VAENLMKKNR ETDADGSLND LIESLERKKK VQIAQVDEHK EYSNKIVEAF RKLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)