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AT3G28300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF677)
Curator
Summary (TAIR10)
Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.
Computational
Description (TAIR10)
AT14A; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28290.1); Has 228 Blast hits to 220 proteins in 54 species: Archae - 6; Bacteria - 60; Metazoa - 5; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
BioGrid:7786EMBL:AF126374EMBL:AK118201EMBL:AK221728EMBL:AP002051EMBL:AY057599EMBL:AY124839
EMBL:CP002686EnsemblPlants:AT3G28290.1EnsemblPlants:AT3G28300EnsemblPlants:AT3G28300.1entrez:822455entrez:822457GeneID:822455
GeneID:822457Genevisible:P0DI78GO:GO:0016021Gramene:AT3G28290.1Gramene:AT3G28300.1hmmpanther:PTHR31113hmmpanther:PTHR31113:SF3
InterPro:IPR007749KEGG:ath:AT3G28290KEGG:ath:AT3G28300ncoils:CoilPaxDb:P0DI78Pfam:P0DI78Pfam:P0DI79
Pfam:PF05055PhylomeDB:P0DI78PRIDE:P0DI78PRO:PR:P0DI78ProteinModelPortal:P0DI78Proteomes:UP000006548RefSeq:NP_189469.1
RefSeq:NP_189470.1STRING:3702.AT3G28300.1TAIR:AT3G28290tair10-symbols:AT14ATMHMM:TMhelixUniGene:At.5794UniGene:At.72873
UniProt:P0DI78UniProt:P0DI79
Coordinates (TAIR10) chr3:+:10566106..10567263
Molecular Weight (calculated) 42957.40 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.39
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLSKENMLK YSAHLRAYNS ACGDHPELKS FDSELQQKTS NLINSFTSDA KTGLVPLPQH AAYKEFTKHL AEVNQQVSDY IIGYGEVVWE NSTLRSLVET
101: YFESAKKTLD IAENVTEYVD EAKRGERYIV AAVAQFEKDK ENDVGKKTKR YENTLRELKK FEAMGNPFDG DKFTTLFKLM HKEQESLLER VRETKEKLDE
201: ELKNIEMEIS SRKKWSIISN VLFIGAFVAV AVGSMVLVCT GVGAGVGVAG LLSLPLIAIG WVGVHTILEN KIQAREKQEE ALKKAHRIAN EMDKGMETDK
301: VDMNSISGKV HALKSKITSM LNAVKDATED GANEVDTKQV METLTGDVVE LTEDIKAVGD DVAKYSKMIE ETSYHVLQKI TGSGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)