AT3G21960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.548 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Receptor-like protein kinase-related family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Receptor-like protein kinase-related family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT2G31620.1); Has 1451 Blast hits to 1422 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1451; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7737156..7739542 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49461.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSSSVTKH LISASILAIV AMQLPSVHSV LSLNETNAYL HHICINGEGT FKSGSPYEKE IKQLIDFLSS FIKDYSFVHG VSGIGPDDIN VKFQCRGDTL 101: QAKCRSCLAT AFSEIRSKCP NNKGRIIWYD NCHLDLSSIY TYGQIDYKNN FYMYNAKDVR GDKKSFYKNM KAFLHKLKAK ASSKENKPYV KDYMYAAGRE 201: SLGTVKLYAM VQCTQDLSLK NCTVCLDWIM TKLPECCNGK QGGRVLSPSC NFSQSLCALS EPIVHELQLT KRLQINNFMG IIQETRSLRK NGIMIPSPRS 301: ASICYVLSKL NALSTTTLAC NLKHQITITL ARFYVKALLR VDFLVPARSQ TLIPSLTPLC LLTAAICSSI DSFLEELSMT FDLTCTKKLV SFRLKALKDL 401: LCFYLIYPSF YLMLALGNAF ISCIVNIRIS DSVSVLGFYH H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)