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AT3G21620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ERD (early-responsive to dehydration stress) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G15430.2); Has 1522 Blast hits to 1336 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 725; Plants - 435; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5594eggNOG:KOG1134EMBL:AB019232EMBL:AK220939EMBL:CP002686EnsemblPlants:AT3G21620EnsemblPlants:AT3G21620.1
entrez:821716ExpressionAtlas:Q9LVE4GeneID:821716Genevisible:Q9LVE4GO:GO:0005886GO:GO:0006811GO:GO:0016021
Gramene:AT3G21620.1hmmpanther:PTHR13018hmmpanther:PTHR13018:SF46HOGENOM:HOG000241414InParanoid:Q9LVE4InterPro:IPR003864InterPro:IPR027815
InterPro:IPR032880iPTMnet:Q9LVE4KEGG:ath:AT3G21620ncoils:CoilOMA:DITMEESPaxDb:Q9LVE4Pfam:PF02714
Pfam:PF13967Pfam:PF14703Pfam:Q9LVE4PhylomeDB:Q9LVE4PRIDE:Q9LVE4PRO:PR:Q9LVE4ProteinModelPortal:Q9LVE4
Proteomes:UP000006548RefSeq:NP_188799.1STRING:3702.AT3G21620.1TAIR:AT3G21620TMHMM:TMhelixUniGene:At.53420UniProt:A0A097NUS0
UniProt:Q9LVE4
Coordinates (TAIR10) chr3:-:7611044..7614041
Molecular Weight (calculated) 86691.40 Da
IEP (calculated) 9.44
GRAVY (calculated) 0.19
Length 756 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLTDIGVA ATINILTAFA FFIAFAILRL QPVNDRVYFP KWYLKGLRSS PIKTGGFASK FVNLDFRSYI RFLNWMPQAL RMPEPELIDH AGLDSVVYLR
101: IYLLGLKIFF PIACIAFTVM VPVNWTNSTL DQLKNLTFSD IDKLSISNIP TGSSRFWVHL CMAYVITFWT CFVLQREYKH IASMRLQFLA SEHRRPDQFT
201: VLVRNIPPDP DESVSELVEH FFKVNHPDYY LTYQAVYNAN KLSELVQKRM KLQNWLDYYQ NKHSRNPSKR PLIKIGFLGC WGEEVDAIDH YIEKIEGLTR
301: KISEEKETVM SSTKSLVPAA FVSFKKRWGA VVCSQTQQSR NPTEWLTEWA PEPRDIYWDN LALPYVQLTI RRLVIAVAFF FLTFFFMIPI AFVQTLANIE
401: GIEKAVPFLK PLIEVKTVKS FIQGFLPGIA LKIFLIVLPS ILMLMSKFEG FISKSSLERR CASRYYMFQF INVFLCSIIA GTALQQLDSF LNQSATEIPK
501: TIGVSIPMKA TFFITYIMVD GWAGVAGEIL RLKPLIIYHL KNFFLVKTEK DREEAMDPGT IGFNTGEPQI QLYFILGLVY AAVSPILLPF ILVFFALAYV
601: VYRHQIINVY NQEYESAAAF WPDVHRRVVI ALIVSQLLLM GLLSTKKAAR STPLLFILPV LTIGFHKFCQ GRYQPIFVTY PLQDAMVKDT LERMREPNLN
701: LKTFLQNAYA HPVFKAADNL ANEMVVEEPA PDKTPDLVAT KRGSRRFNSG SAETFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)