AT3G21210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G34480.1); Has 2127 Blast hits to 1070 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7438241..7440756 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91880.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 804 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNPESDHPS SPRQRKIGIA VELSEESAFT VRWAVDNYIR QGDDIIILHV SPTAGLFGAD WGYYPLQTQP PYTTASIFSK VADLGKPLKE AGFPHTIHTV 101: KDYDKRERLC LETQRLNLTA LIMGFGDGSV SDFCVHHCVC QVVVVRYPDG PGSVEGTRAA PIVTFKSRTD DDEEIDKAKT ALTASVHHQH IKAMDSVSKQ 201: PLLFCPRAYF TNNEEDFRAM QFREPPNLSS PSFHLTSLVL GNDFNITRKY YYDRHGKGFI KGHRPNKQCE ICSKSLLGTT FYSCTLCLRP SCSPLQSSVL 301: SRSSGYYHEA CIEPISKHPY HPKHALRFRY ESGQICLSCS TFKDFAYHCS ICNFTMCQDC AREPPLFAID YPKRHEHTLF YFQRKGSLIC DVCGLSDGRS 401: LLYSCVKCNF VVHKECVYFP CIIKISRHEH RLSFNSSLTP EQWLCGVCRE SIDTNFARYS CVKGCSFAVH SKCATRKDVW DGKELEGEPE EDESLYIFKS 501: FNEISDGIIE YFRHKSHHMR LDEDTNRAFD EDKRCRACTF PICDDLIYSC MQCDFILHQT CAHLPPRKQH ATHPHPLLLL VDEEHEDYFQ CTACKRESNG 601: FAYTCCARDC NFTLDVSCAS IAESLIHRFH PHPIYLIHES TAQEFCSICG QLIGHRLNCG ECRFALCFGC ATLPNKLRYK HDEHFLIFSY DEDFSGSQES 701: GPHLCEVCEK QANPKNGVYM CNDCNVTLHV ECLLGKEMYM MPIGGLISRN VNVDILPNNR LTRNICQRCH NRCQGKIIFK ARDRSTFLCS LFCCLTKSWV 801: DRDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)