AT3G17712.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1); Has 265 Blast hits to 264 proteins in 123 species: Archae - 1; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 33; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6056983..6059913 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89802.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.38 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||
| Length | 794 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNTPEDGDG AQVTTGGLFP VFPTSANSIS AISNAPQWLR NASFTTDLSV INAAASTAPS SSEVEAGDDE DEEGGADGNI GLANQARVYN LVEEEGSLES 101: DDDKVKRKRE KKKKRKSDNA SDESRSRKSD EYYSKPVKDY YLDTRPDPDN LAYGSIYRMN VPRYKLDNSQ RVPGSGSLRF YLRNRRSSML DTEIDIDSLE 201: GRAKSDTRYW YAKHAAMERN KNFKRIRLSA ASEAVDSSFD NFIPLEEDVT VPESDEEDVL SKDSMIGASW EDEVLNKTRE FNRVTRERPH DAKAWLAFAD 301: FQDKVSSMQS QKGVRLQTLE KKISILEKAF ELNPDSEELL LALLKAYRSR DNADVLISRW EKALMQNSAS YKLWREFLCV VQGEFSRFKV SEVRRLYSYA 401: IQALSSACSK RHRQVDTTSE PLDSAAIQQE LVLVDMLVSL CRFEWQAGYQ ELATALLQAE VEFSIFSPSL LLTEQSKLRL FEHFWSSNGA RVGEEGAFGW 501: LLWLEKEEEN RQKILKEESS DDNEVGGWTG WTEQVSGRNG DDLASANTGE VDVDRKGLDE EMEDENSKPE DDTEAMLKLL GIDVNTAASD EVKDTSTWVE 601: WFEEEVSRDH SQWMPTRKAG EFSSVEGMGE GEDEEQLSSV VLYEDINGYL FSLRSKEARL SLVYQFIDFF GAHISPMDFQ QQLSWSEKIS SLETLSDSML 701: ENLRSVHECL SKSDSANCFS LGSLLGGSCD LSMRTEMMKF LRNAILLCLN VFPQNYIPEE AVLVTEELFV TNMKTCEVRS NYAMPSFGQT SPEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)