AT3G16610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 44074 Blast hits to 13558 proteins in 215 species: Archae - 0; Bacteria - 6; Metazoa - 87; Fungi - 74; Plants - 43358; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5656371..5658335 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72849.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 654 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLSLLETCI RSRNLVLGQV IHQHLLKRSL TLSSSTVLVN LTRLYASCNE VELARHVFDE IPHPRINPIA WDLMIRAYAS NDFAEKALDL YYKMLNSGVR 101: PTKYTYPFVL KACAGLRAID DGKLIHSHVN CSDFATDMYV CTALVDFYAK CGELEMAIKV FDEMPKRDMV AWNAMISGFS LHCCLTDVIG LFLDMRRIDG 201: LSPNLSTIVG MFPALGRAGA LREGKAVHGY CTRMGFSNDL VVKTGILDVY AKSKCIIYAR RVFDLDFKKN EVTWSAMIGG YVENEMIKEA GEVFFQMLVN 301: DNVAMVTPVA IGLILMGCAR FGDLSGGRCV HCYAVKAGFI LDLTVQNTII SFYAKYGSLC DAFRQFSEIG LKDVISYNSL ITGCVVNCRP EESFRLFHEM 401: RTSGIRPDIT TLLGVLTACS HLAALGHGSS CHGYCVVHGY AVNTSICNAL MDMYTKCGKL DVAKRVFDTM HKRDIVSWNT MLFGFGIHGL GKEALSLFNS 501: MQETGVNPDE VTLLAILSAC SHSGLVDEGK QLFNSMSRGD FNVIPRIDHY NCMTDLLARA GYLDEAYDFV NKMPFEPDIR VLGTLLSACW TYKNAELGNE 601: VSKKMQSLGE TTESLVLLSN TYSAAERWED AARIRMIQKK RGLLKTPGYS WVDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)