suba logo
AT3G05960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sugar transporter 6
Curator
Summary (TAIR10)
Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.
Computational
Description (TAIR10)
sugar transporter 6 (STP6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity; INVOLVED IN: carbohydrate transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26250.1); Has 24729 Blast hits to 24248 proteins in 1903 species: Archae - 447; Bacteria - 10610; Metazoa - 3461; Fungi - 6515; Plants - 2500; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC013454EMBL:AJ001659EMBL:AJ344337EMBL:CP002686EnsemblPlants:AT3G05960
EnsemblPlants:AT3G05960.1entrez:819766GeneID:819766Genevisible:Q9SFG0GO:GO:0005351GO:GO:0005355GO:GO:0005887
GO:GO:0015145GO:GO:0015992GO:GO:0034219GO:GO:0035428GO:GO:0046323GO:GO:1904659Gramene:AT3G05960.1
hmmpanther:PTHR23500hmmpanther:PTHR23500:SF77HOGENOM:HOG000202867InParanoid:Q9SFG0InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829
InterPro:IPR020846KEGG:ath:AT3G05960OMA:HACDIASPaxDb:Q9SFG0Pfam:PF00083Pfam:Q9SFG0Pfscan:PS50850
PhylomeDB:Q9SFG0PRIDE:Q9SFG0PRINTS:PR00171PRO:PR:Q9SFG0PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q9SFG0
Proteomes:UP000006548RefSeq:NP_187247.1scanprosite:PS00217SMR:Q9SFG0STRING:3702.AT3G05960.1SUPFAM:SSF103473TAIR:AT3G05960
tair10-symbols:ATSTP6tair10-symbols:STP6TCDB:2.A.1.1.56TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.26445
UniProt:Q9SFG0
Coordinates (TAIR10) chr3:-:1783587..1785334
Molecular Weight (calculated) 55910.30 Da
IEP (calculated) 8.00
GRAVY (calculated) 0.65
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVVVSNANA PAFEAKMTVY VFICVMIAAV GGLIFGYDIG ISGGVSAMDD FLKEFFPAVW ERKKHVHENN YCKYDNQFLQ LFTSSLYLAA LVASFVASAT
101: CSKLGRRPTM QFASIFFLIG VGLTAGAVNL VMLIIGRLFL GFGVGFGNQA VPLFLSEIAP AQLRGGLNIV FQLMVTIGIL IANIVNYFTA TVHPYGWRIA
201: LGGAGIPAVI LLFGSLLIIE TPTSLIERNK NEEGKEALRK IRGVDDINDE YESIVHACDI ASQVKDPYRK LLKPASRPPF IIGMLLQLFQ QFTGINAIMF
301: YAPVLFQTVG FGSDAALLSA VITGSINVLA TFVGIYLVDR TGRRFLLLQS SVHMLICQLI IGIILAKDLG VTGTLGRPQA LVVVIFVCVY VMGFAWSWGP
401: LGWLIPSETF PLETRSAGFA VAVSCNMFFT FVIAQAFLSM LCGMRSGIFF FFSGWIIVMG LFAFFFIPET KGIAIDDMRE SVWKPHWFWK RYMLPEDDHH
501: DIEKRNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)