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AT2G43810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.576
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1); Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305; Bacteria - 0; Metazoa - 337; Fungi - 255; Plants - 126; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG1783EMBL:AC002333EMBL:AK227857EMBL:AK317095EMBL:AK317739EMBL:BT008305
EMBL:CP002685EnsemblPlants:AT2G43810EnsemblPlants:AT2G43810.1EnsemblPlants:AT2G43810.2entrez:818985GeneID:818985Genevisible:O22823
GO:GO:0000398GO:GO:0000932GO:GO:0003723GO:GO:0005681GO:GO:0005688GO:GO:0005730GO:GO:0005732
GO:GO:0030490GO:GO:0046540Gramene:AT2G43810.1Gramene:AT2G43810.2hmmpanther:PTHR11021hmmpanther:PTHR11021:SF5HOGENOM:HOG000223542
InParanoid:O22823IntAct:O22823InterPro:IPR001163InterPro:IPR010920iPTMnet:O22823KEGG:ath:AT2G43810KO:K12625
OMA:YISTTKGPaxDb:O22823Pfam:O22823Pfam:PF01423PhylomeDB:O22823PIR:G84870PRIDE:O22823
PRO:PR:O22823ProteinModelPortal:O22823Proteomes:UP000006548Reactome:R-ATH-430039Reactome:R-ATH-72163RefSeq:NP_001078052.1RefSeq:NP_181909.1
SMART:SM00651SMR:O22823STRING:3702.AT2G43810.1SUPFAM:SSF50182TAIR:AT2G43810UniGene:At.36842UniProt:O22823
Coordinates (TAIR10) chr2:+:18149725..18150879
Molecular Weight (calculated) 9728.59 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.27
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)