AT2G37960.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 418 Blast hits to 247 proteins in 92 species: Archae - 0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:15886962..15889180 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 52479.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSNRSKTS ERIIGNGEVT PIQVAFLVDR YLCDNRFSKT RSLFRSEASS LISNSPVREV PNSLLPLNEI LNEYIRLKKE KIVMDQEKSK LDQEKTRVQN 101: LLNGMQDVMN AYNSSTAAAP PPPPVITSAA PMDKQVVAST SKQNNFGVSS SGCTVYNTQN AMTVSLPGNK RVGNFTGPCI TQSITKKRKS PEVSVGAPSV 201: SRKGMKKIPQ AANYLTFQTP SEMQTPLNNG VATNESSDLT SSVAKCLFDK SGTSPPSNST CPRTPQQKVS PQSDKEVTPT NCTIVTKERI TVSPLKQIAS 301: YTVERSHTVS SFSPVKSNLK MSSKRDHVKG RLNFDDTEAT MHLDAPATVD MVSTSSSGSE AEADLFDIDF SNIDLLSEDF SFSELLFDFD IGCEEMSNHS 401: LPQPSNFHIE TASGSSPESR NTNLEPDQVV SEYTSTVTEM IQGKDMNTQG SDSMTTVKSI TKCLRILSPA KNCRQRVTLD |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)