AT2G30940.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.897 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G01540.2); Has 56155 Blast hits to 55584 proteins in 2069 species: Archae - 54; Bacteria - 4141; Metazoa - 18125; Fungi - 3015; Plants - 25124; Viruses - 134; Other Eukaryotes - 5562 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr2:+:13168533..13170285 | ||||||||
| Molecular Weight (calculated) | 51576.90 Da | ||||||||
| IEP (calculated) | 9.08 | ||||||||
| GRAVY (calculated) | -0.12 | ||||||||
| Length | 451 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MQEWLEILLI HTLIDSSSLS PQRLRVMNRI ISSQGSDLIK QKLSQHTSFF GIKLWILITA SASIAFLLVL IISVLLCFIF HRRRCSQEPF RLRSKLCLPL 101: SHIPLTNKQQ IPYNRCGDDI ESQRISQVGW SSARLSYYTR SFSSTGSFGS FNVFTFMEIK NVTDSFADDN VITKGDSSTV YRGILMGTVT VAVKRFLPSN 201: SRYEDKDFIT KAEMIANVRH KNVVRLLGYC IEGDERVLVY EYAEKGDLHE WLHGSAGRNR PLTWRKRMKI IQGVAKGLAY IHEDIEPKIT HQDIRPSKIL 301: LDYQWNPKIL DVGFIGHSDI PTLIPSPGNM DEKIDVYSFG NMIMELVSGR VSVDQSSPHV YLVDWIKEMV ANHMIVDVLD PSLPEFPTIK ELKRIVLISL 401: RCVDPELKER PKMGDVIHML QPHDLLLNNN AIQKAQKITR SHEVSAISIR Q |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)