AT2G26610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT3G33530.1); Has 171 Blast hits to 144 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11318771..11324174 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136907.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
| Length | 1249 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MCSSSDCILP GPPSRSNLSA ADLSPSGLLA FASGSSVSLV DSRSLQLISS VSLPSPISCA FSTVTSVRWA PVPVQRDLFS SDLLIAVGDH LGRIALVDFR 0101: LCSVRLWLEQ SCDSASARGK SLGCGGVQDL CWVLARPDSY VLAAITGPSS LSLYTDSGQL FWKYDASPEY LSCIRCDPFD SRHFCVLGLK GFLLSLKLLG 0201: TTENDVPTKE FQIQTDCSDL QKLEREVVAS SSHSTCPASA VFPLYSAKFS FSPHWKHILF ATFPRELFVF DLKYEAALYV VALPRGYAKF VDVLPDPSQE 0301: FLYCLHLDGR LSIWRRKEGE QVHVLCAIEE FMPTIGNSVP SPSLLTLLIS QLDSTLQNIR TIHSDALLDS SELEISFDFN NDAFLLFKTH FISISDDGKI 0401: WSWILTFNGD EDSNPQTNEN LIESPTNGNQ DLHPNISFEI TLVGQLQLLS SAVTVLAIPT PSMTATLARG GNFPAVVVPL VALGTEAGTI DVVDVSANAV 0501: AASFSAHTSS IRGLNWLGNS RLVSYSCSRV SKRTGGYVNK LVVTCLRSGV SRGFRVLQKP ERAPIRALRA SSSGRYLLIL FRDAPVEVWA MTKSPVMLRS 0601: LALPFTVLEW TLPTIPSIAQ KSLSKQLSMS SNQEVNVTPS DIETPNASDS KAVAADALQD DASESFAFAL VNGSLGVFEV YGRRIRDFRP KWPASSFIST 0701: DGLITAMAYR LPHVVTGDKL GNIRWWDVVS GNSSSFNTCK EGIKKIKFSP VFSGDISRGR ITVLFYDNTF SIYDLDSPDP LAISLMRPQI PGTLILELDW 0801: LPLRTSKFDS LVLCVAGTDG SFRLVEVHLD EKMTTQIPPK ERFRSVPLCT PMLLPTPHAL LGVKPSWFNT SSTCIDKRPH SIPGRTSSSK DLRSFMIDFP 0901: PIGDPAVLEM FLKVLEPYRS EGCLLDDEKA KLYSSLVNKG CAARFAFAAA IFGETSEALF WLQLPSAMKH VVNKTASKSA KKQFEETATL SKTSSKGPSS 1001: TGFEKNGSMS EGQLRLMAFE QKDLWVCANE RIPWHEKLEG EEAIQNRVHE LVSVGNLEGA VSLLLSTSPD SSYFYPNALR AVALSSTVSK SLVELAVKVV 1101: AANMVRSDRS LSGTHLLCSV GRYQEACSQL QDAGCWTDSA TLAATHLNGS DYARVLQRWA GHVVNIEHNL WRGVILYVAV GAFEEALAVF RKAERAETAA 1201: IFIMACRETL ADSWSIDPKN EDVMVVTESY ALYQRKLVHL CMDSPPSFH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)