suba logo
AT2G21750.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1278)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21740.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J18JeggNOG:ENOG410Z0NDEMBL:AC007019EMBL:CP002685EMBL:DQ446545EMBL:DQ653012EnsemblPlants:AT2G21750
EnsemblPlants:AT2G21750.1entrez:816712GeneID:816712GO:GO:0005576GO:GO:0007338GO:GO:0009567GO:GO:0016023
GO:GO:0031982GO:GO:0080155GO:GO:2000008Gramene:AT2G21750.1hmmpanther:PTHR35293hmmpanther:PTHR35293:SF1HOGENOM:HOG000272692
InParanoid:Q9SJ23InterPro:IPR008502KEGG:ath:AT2G21750OMA:AVEQHCWPaxDb:Q9SJ23Pfam:PF05617Pfam:Q9SJ23
PhylomeDB:Q9SJ23PIR:G84604PRIDE:Q9SJ23PRO:PR:Q9SJ23Proteomes:UP000006548RefSeq:NP_179767.1STRING:3702.AT2G21750.1
TAIR:AT2G21750UniGene:At.66229UniProt:Q9SJ23
Coordinates (TAIR10) chr2:-:9283367..9283744
Molecular Weight (calculated) 13273.10 Da
IEP (calculated) 4.35
GRAVY (calculated) 0.43
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNTSFLFV TVTLLLVLNV SSRALPPVAD STNIAARLTG GGLMQCWDAL YELKSCTNEI VLFFLNGETK LGYGCCNAVD VITTDCWPAM LTSLGFTLEE
101: TNVLRGFCQS PNSGGSSPAL SPVKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)