suba logo
AT2G19630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.897
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G65850.1); Has 1237 Blast hits to 901 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1237; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC005917EMBL:CP002685EnsemblPlants:AT2G19630EnsemblPlants:AT2G19630.1entrez:816482ExpressionAtlas:Q9ZUN0GeneID:816482
Genevisible:Q9ZUN0hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703InParanoid:Q9ZUN0InterPro:IPR001810InterPro:IPR013187
InterPro:IPR017451OMA:VNSIARCPaxDb:Q9ZUN0Pfam:PF00646Pfam:PF08268Pfam:Q9ZUN0PhylomeDB:Q9ZUN0
PIR:B84579PRIDE:Q9ZUN0PRO:PR:Q9ZUN0ProteinModelPortal:Q9ZUN0Proteomes:UP000006548RefSeq:NP_179553.1SMART:SM00256
SUPFAM:SSF81383TAIR:AT2G19630TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.66222UniProt:Q9ZUN0
Coordinates (TAIR10) chr2:-:8490217..8491110
Molecular Weight (calculated) 34672.10 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.12
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTSLRLEDG TKNSLQIPID LIIEIFLRLS VNSIARCRCV SKQWASTLSR PYFTELFLTR SLARPKLLFA YRKGSDYLFL SSPQLQNPDD DHKKSSPVVV
101: NYHMHHILTL GSGNMSWRTI QCCIPHRSFD GGICIDGLIY YYAGVNNNDI VIVCFDVRSE EFRFIIGALH HGSLINYNGK LSLYLPSTVY SRFNGVIRSI
201: KLWVLEDAKR QEWSEHTYIL PAMHDIMKTT DLRCVGMTQT KEFVFWSIKG MRFYVFYYNI ERNTIKKVEM QGMEAFKESN VYTFLDHVED VKLMQFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)